MolNFT v1 · #129236 · protein
Structure of large terminase from the thermophilic bacteriophage D6E in complex with ADP (crystal form 3)
5OEB: “Structure of large terminase from the thermophilic bacteriophage D6E in complex with ADP (crystal form 3)”. X-ray diffraction, 2 ligands (ADP, MG). MolNFT v1 #129236 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OEB
- Type
- protein
- Length
- 2,424 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- E5DV50
- Ligands
- ADP, MG
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D, E | — | protein | 405 | — | E5DV50 |
| C | — | protein | 402 | — | E5DV50 |
| F | — | protein | 402 | — | E5DV50 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OEB · Structure of large terminase from the thermophilic bacteriophage D6E in complex with ADP… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E5DV50
- Elsewhere: RCSB PDB 5OEB · PDBe 5OEB · UniProt E5DV50
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