MolNFT v1 · #129221 · protein

Structure of the fpvai-pyocin S2 complex

5ODW: “Structure of the fpvai-pyocin S2 complex”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #129221 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ODW
Type: protein
Length: 1,904 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P48632, Q06584
Ligands: SO4

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	771	—	P48632
B	—	protein	740	—	P48632
C	—	protein	195	—	Q06584
D	—	protein	198	—	Q06584

Ligands and binding sites

SO4 · Sulfate ion · ion · 10 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

P48632 · AlphaFold monomer V2.0 prediction for ferripyoverdine receptor (P48632) · a predicted model of the same protein · chain B against A, TM-score 0.99
Q06584 · AlphaFold monomer V2.0 prediction for pyocin-S2 (Q06584) · a predicted model of the same protein · chain D against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P48632
Every structure of UniProt Q06584
Elsewhere: RCSB PDB 5ODW · PDBe 5ODW · UniProt P48632 · UniProt Q06584

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