MolNFT v1 · #129152 · protein

Mycoplasma genitalium dnak-nbd in complex with AMP-pnp

5OBY: “Mycoplasma genitalium dnak-nbd in complex with AMP-pnp”. X-ray diffraction, 3 ligands (ANP, MG, SO4). MolNFT v1 #129152 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5OBY
Type: protein
Length: 365 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P47547
Ligands: ANP, MG, SO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	365	—	P47547

Ligands and binding sites

ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
MG · Magnesium ion · metal · chains A
SO4 · Sulfate ion · ion · 3 copies · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5OBY · Mycoplasma genitalium DnaK-NBD in complex with AMP-PNP · the same entry in another collection · chain A against A, TM-score 1.00
P47547 · AlphaFold monomer V2.0 prediction for chaperone protein dnak (P47547) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P47547
Elsewhere: RCSB PDB 5OBY · PDBe 5OBY · UniProt P47547

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