MolNFT v1 · #129130 · protein
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RUII(CO)3CL2(N3-mim), MIM=METHYL-imidazole (crystals grown using nacl)
5OB8: “X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RUII(CO)3CL2(N3-mim)…”. X-ray diffraction, 4 ligands (9QB, RU2, NA). MolNFT v1 #129130 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5OB8
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00698
- Ligands
- 9QB, RU2, NA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 129 | — | P00698 |
Ligands and binding sites
- 9QB · chloranyl-bis(oxidaniumyl)-tris(oxidaniumylidynemethyl)ruthenium · ligand · chains A
- RU2 · pentakis(oxidaniumyl)-(oxidaniumylidynemethyl)ruthenium · ligand · chains A
- NA · Sodium ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OB8 · X-ray structure of the adduct formed upon reaction of lysozyme with the compound… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 5OB8 · PDBe 5OB8 · UniProt P00698
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.