MolNFT v1 · #129128 · protein
X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RUII(CO)3CL2(N3-im), IM=IMIDAZOLE
5OB6: “X-ray structure of the adduct formed upon reaction of lysozyme with the compound fac-[RUII(CO)3CL2(N3-im)…”. X-ray diffraction, 5 ligands (RU2, 9Q8, RU1). MolNFT v1 #129128 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5OB6
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00698
- Ligands
- RU2, 9Q8, RU1, NA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 129 | — | P00698 |
Ligands and binding sites
- RU2 · pentakis(oxidaniumyl)-(oxidaniumylidynemethyl)ruthenium · ligand · 3 copies · chains A
- 9Q8 · tris(oxidaniumylidynemethyl)-tris(oxidanyl)ruthenium · ligand · chains A
- RU1 · bis(oxidaniumylidynemethyl)ruthenium(2+) · ligand · chains A
- NA · Sodium ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OB6 · X-ray structure of the adduct formed upon reaction of lysozyme with the compound… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 5OB6 · PDBe 5OB6 · UniProt P00698
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