MolNFT v1 · #129121 · protein

Crystal structure of the abl-SH3 domain at pH 7.5

5OAZ · Tyrosine-protein kinase ABL1: “Crystal structure of the abl-SH3 domain at pH 7.5”. X-ray diffraction. MolNFT v1 #129121 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5OAZ
Type: protein
Length: 115 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tyrosine-protein kinase ABL1
EC: 2.7.10.2
UniProt: P00519

Structure

x-ray diffraction · 2 distinct chains · 5% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tyrosine-protein kinase ABL1 (EC 2.7.10.2)	protein	59	5% helix, 49% strand	P00519
B	Tyrosine-protein kinase ABL1 (EC 2.7.10.2)	protein	56	5% helix, 50% strand	P00519

Ligands and binding sites

PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 209 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

5OAZ · Crystal structure of the Abl-SH3 domain at pH 7.5 · the same entry in another collection · chain A against A, TM-score 1.00
P00519 · AlphaFold monomer V2.0 prediction for tyrosine-protein kinase ABL1 (P00519) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00519
Elsewhere: RCSB PDB 5OAZ · PDBe 5OAZ · UniProt P00519

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