MolNFT v1 · #129098 · protein
A novel crystal form of human RNASE6 at atomic resolution
5OAB · Ribonuclease K6: “A novel crystal form of human RNASE6 at atomic resolution”. X-ray diffraction, 4 ligands (NA, K, PO4), 1 pocket (best druggability 0.31). MolNFT v1 #129098 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5OAB
- Type
- protein
- Length
- 128 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribonuclease K6
- EC
- 3.1.27.-
- UniProt
- Q93091
- Ligands
- NA, K, PO4, CL
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribonuclease K6 (EC 3.1.27.-) | protein | 128 | 22% helix, 34% strand | Q93091 |
Ligands and binding sites
- NA · Sodium ion · metal · 3 copies · chains A
- K · Potassium ion · metal · chains A
- PO4 · Phosphate ion · ion · 6 copies · chains A
- CL · Chloride ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.31 | 0.74 | 19 | PO4, NA, CL |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93091
- Elsewhere: RCSB PDB 5OAB · PDBe 5OAB · UniProt Q93091
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