MolNFT v1 · #128995 · protein
Crystal structure of OMP35 from enterobacter aerogenes
5O78 · Phosphoporin phoe: “Crystal structure of OMP35 from enterobacter aerogenes”. X-ray diffraction, 13 pockets (best druggability 0.75). MolNFT v1 #128995 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O78
- Type
- protein
- Length
- 993 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoporin phoe
- UniProt
- A0A0F1QVM5
- Pockets
- 13 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Phosphoporin phoe | protein | 331 | 7% helix, 57% strand | A0A0F1QVM5 |
Pockets
13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.75 | 0.97 | 15 | empty |
| 2 | 1004 | 0.69 | 0.74 | 90 | empty |
| 3 | 982 | 0.69 | 0.74 | 98 | empty |
| 4 | 853 | 0.68 | 0.75 | 75 | empty |
| 5 | 183 | 0.44 | 0.74 | 25 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1414 Ų buried · 18 hydrogen bonds · protein-protein
- B–C · 1388 Ų buried · 21 hydrogen bonds · protein-protein
- A–C · 1381 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 5O78 · Crystal structure of Omp35 from Enterobacter aerogenes · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F1QVM5
- Elsewhere: RCSB PDB 5O78 · PDBe 5O78 · UniProt A0A0F1QVM5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.