MolNFT v1 · #128994 · protein
Klebsiella pneumoniae OMPK35
5O77: “Klebsiella pneumoniae OMPK35”. X-ray diffraction, 2 pockets (best druggability 0.65). MolNFT v1 #128994 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O77
- Type
- protein
- Length
- 337 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- OMPK35
- UniProt
- A0A1P8FCM7
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | OMPK35 | protein | 337 | 6% helix, 59% strand | A0A1P8FCM7 |
Ligands and binding sites
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A
- C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 694 | 0.65 | 0.74 | 65 | TRS, C8E |
| 2 | 225 | 0.47 | 0.74 | 42 | C8E |
Compared structures
- 5O77 · Klebsiella pneumoniae OmpK35 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1P8FCM7
- Elsewhere: RCSB PDB 5O77 · PDBe 5O77 · UniProt A0A1P8FCM7
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