MolNFT v1 · #128984 · protein
The cryo-EM structure of tick-borne encephalitis virus complexed with Fab fragment of neutralizing antibody 19/1786
5O6V: “The cryo-EM structure of tick-borne encephalitis virus complexed with Fab fragment of neutralizing antibody…”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #128984 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O6V
- Type
- protein
- Length
- 2,529 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q01299
- Ligands
- NAG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 492 | — | Q01299 |
| D, E, F | — | protein | 71 | — | Q01299 |
| H, I | — | protein | 212 | — | — |
| L, M | — | protein | 208 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O6V · The cryo-EM structure of Tick-borne encephalitis virus complexed with Fab fragment of… · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q01299
- Elsewhere: RCSB PDB 5O6V · PDBe 5O6V · UniProt Q01299
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