MolNFT v1 · #128968 · protein + DNA
Structure of SCPIF1 in complex with tttgggtt and ADP-ALF4
5O6E: “Structure of SCPIF1 in complex with tttgggtt and ADP-ALF4”. X-ray diffraction, 4 ligands (ADP, ALF, MG). MolNFT v1 #128968 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O6E
- Type
- protein + DNA
- Length
- 1,037 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07271
- Ligands
- ADP, ALF, MG, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 512 | — | P07271 |
| B | — | protein | 513 | — | P07271 |
| C, D | — | dna | 6 | — | — |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
- ALF · Tetrafluoroaluminate ion · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O6E · Structure of ScPif1 in complex with TTTGGGTT and ADP-AlF4 · the same entry in another collection · chain A against A, TM-score 1.00
- P07271 · AlphaFold monomer V2.0 prediction for ATP-dependent DNA helicase PIF1 (P07271) · a predicted model of the same protein · chain B against A, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07271
- Elsewhere: RCSB PDB 5O6E · PDBe 5O6E · UniProt P07271
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