MolNFT v1 · #128952 · protein

Crystal structure of thermococcus litoralis ADP-dependent glucokinase (gk)

5O5X: “Crystal structure of thermococcus litoralis ADP-dependent glucokinase (gk)”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #128952 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5O5X
Type: protein
Length: 903 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q7M537
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	454	—	Q7M537
B	—	protein	449	—	Q7M537

Ligands and binding sites

SO4 · Sulfate ion · ion · 6 copies · chains A, B
GOL · Glycerol · additive · 11 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5O5X · Crystal structure of Thermococcus litoralis ADP-dependent glucokinase (GK) · the same entry in another collection · chain A against A, TM-score 1.00
Q7M537 · AlphaFold monomer V2.0 prediction for ADP-dependent GLUCOSE/GLUCOSAMINE kinase (Q7M537) · a predicted model of the same protein · chain B against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7M537
Elsewhere: RCSB PDB 5O5X · PDBe 5O5X · UniProt Q7M537

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