MolNFT v1 · #128940 · protein + RNA
Structure of the 30S small ribosomal subunit from mycobacterium smegmatis
5O5J: “Structure of the 30S small ribosomal subunit from mycobacterium smegmatis”. Electron microscopy, 2 ligands (MG, ZN). MolNFT v1 #128940 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5O5J
- Type
- protein + RNA
- Length
- 3,942 residues
- Chains
- 24
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0QR10, A0QSD7, A0QSL7, A0QSG6, A0A0D6J3X3, A0QS97, A0QSG3, A0QSP9, A0QSD0, A0QSL6, A0QS96, A0QSL5, A0QSG2, A0QVQ3, A0QV37, A0QSE0, A0R7F7, A0QSD5, A0R102, A0QVB8, A0R215
- Ligands
- MG, ZN
Structure
electron microscopy · 24 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 1511 | — | — |
| B | — | protein | 32 | — | A0QR10 |
| C | — | protein | 208 | — | A0QSD7 |
| D | — | protein | 200 | — | A0QSL7 |
| E | — | protein | 180 | — | A0QSG6 |
| F | — | protein | 96 | — | A0A0D6J3X3 |
| G | — | protein | 155 | — | A0QS97 |
| H | — | protein | 131 | — | A0QSG3 |
| I | — | protein | 126 | — | A0QSP9 |
| J | — | protein | 99 | — | A0QSD0 |
| K | — | protein | 115 | — | A0QSL6 |
| L | — | protein | 122 | — | A0QS96 |
| M | — | protein | 116 | — | A0QSL5 |
| N | — | protein | 60 | — | A0QSG2 |
| O | — | protein | 88 | — | A0QVQ3 |
| P | — | protein | 113 | — | A0QV37 |
| Q | — | protein | 94 | — | A0QSE0 |
| R | — | protein | 65 | — | A0R7F7 |
| S | — | protein | 82 | — | A0QSD5 |
| T | — | protein | 85 | — | A0R102 |
| V | — | protein | 228 | — | A0QVB8 |
| W | — | rna | 19 | — | — |
| X | — | rna | 6 | — | — |
| g | — | protein | 11 | — | A0R215 |
Ligands and binding sites
- MG · Magnesium ion · metal · 217 copies · chains A, O, E, N, P, I, X, K, T, F, R
- ZN · Zinc ion · metal · 2 copies · chains N, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5O5J · Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QR10
- Every structure of UniProt A0QSD7
- Every structure of UniProt A0QSL7
- Every structure of UniProt A0QSG6
- Every structure of UniProt A0A0D6J3X3
- Every structure of UniProt A0QS97
- Every structure of UniProt A0QSG3
- Every structure of UniProt A0QSP9
- Every structure of UniProt A0QSD0
- Every structure of UniProt A0QSL6
- Every structure of UniProt A0QS96
- Every structure of UniProt A0QSL5
- Every structure of UniProt A0QSG2
- Every structure of UniProt A0QVQ3
- Every structure of UniProt A0QV37
- Every structure of UniProt A0QSE0
- Every structure of UniProt A0R7F7
- Every structure of UniProt A0QSD5
- Every structure of UniProt A0R102
- Every structure of UniProt A0QVB8
- Every structure of UniProt A0R215
- Elsewhere: RCSB PDB 5O5J · PDBe 5O5J · UniProt A0QR10 · UniProt A0QSD7 · UniProt A0QSL7 · UniProt A0QSG6 · UniProt A0A0D6J3X3 · UniProt A0QS97 · UniProt A0QSG3 · UniProt A0QSP9 · UniProt A0QSD0 · UniProt A0QSL6 · UniProt A0QS96 · UniProt A0QSL5 · UniProt A0QSG2 · UniProt A0QVQ3 · UniProt A0QV37 · UniProt A0QSE0 · UniProt A0R7F7 · UniProt A0QSD5 · UniProt A0R102 · UniProt A0QVB8 · UniProt A0R215
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