MolNFT v1 · #128918 · protein

Protein structure determination by electron diffraction using a single three-dimensional nanocrystal

5O4W · Lysozyme C: “Protein structure determination by electron diffraction using a single three-dimensional nanocrystal”. Electron crystallography, 4 pockets (best druggability 0.39). MolNFT v1 #128918 on GenesisL1: 3D structure, binding…

PDB: 5O4W
Type: protein
Length: 258 residues
Chains: 2
Method: electron crystallography
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme C
EC: 3.2.1.17
UniProt: P00698
Pockets: 4 · best druggability 0.39

Structure

electron crystallography · 1 distinct chain · 40% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Lysozyme C (EC 3.2.1.17)	protein	129	40% helix, 9% strand	P00698

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.39	0.80	21	empty
2	79	0.36	0.77	20	empty
3	59	0.32	0.76	18	empty
4	64	0.31	0.75	15	empty

Interfaces

1 interface between chains.

A–B · 450 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

5O4W · Protein structure determination by electron diffraction using a single three-dimensional… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00698
Elsewhere: RCSB PDB 5O4W · PDBe 5O4W · UniProt P00698

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