MolNFT v1 · #128827 · protein

Lytic transglycosylase in action

5O29: “Lytic transglycosylase in action”. X-ray diffraction, 7 pockets (best druggability 0.46). MolNFT v1 #128827 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5O29
Type: protein
Length: 576 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transglycosylase
EC: 4.2.2.-
UniProt: A0A0Y5YPU4
Pockets: 7 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transglycosylase (EC 4.2.2.-)	protein	576	67% helix, 1% strand	A0A0Y5YPU4

Pockets

7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	179	0.46	0.75	27	empty
2	165	0.43	0.74	33	empty
3	130	0.41	0.75	24	empty
4	94	0.39	0.76	14	empty
5	73	0.32	0.74	16	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5O29 · Lytic transglycosylase in action · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0Y5YPU4
Elsewhere: RCSB PDB 5O29 · PDBe 5O29 · UniProt A0A0Y5YPU4

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