MolNFT v1 · #12871 · protein
X-ray structure of a methanococcus jannaschii DNA-binding protein: implications for antibiotic resistance in staphylococcus aureus
1KU9 · Hypothetical protein MJ223: “X-ray structure of a methanococcus jannaschii DNA-binding protein: implications for antibiotic resistance in…”. X-ray diffraction, 7 pockets (best druggability 0.89). MolNFT v1 #12871 on GenesisL1: 3D…
- PDB
- 1KU9
- Type
- protein
- Length
- 302 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein MJ223
- UniProt
- Q58958
- Pockets
- 7 · best druggability 0.89
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein MJ223 | protein | 151 | 71% helix, 7% strand | Q58958 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 778 | 0.89 | 0.92 | 53 | empty |
| 2 | 117 | 0.46 | 0.78 | 22 | empty |
| 3 | 82 | 0.41 | 0.78 | 18 | empty |
| 4 | 54 | 0.37 | 0.80 | 11 | empty |
| 5 | 66 | 0.30 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 2312 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 1KU9 · X-ray Structure of a Methanococcus jannaschii DNA-Binding Protein: Implications for… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58958 · AlphaFold monomer V2.0 prediction for putative hth-type transcriptional regulator MJ1563… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58958
- Elsewhere: RCSB PDB 1KU9 · PDBe 1KU9 · UniProt Q58958
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