MolNFT v1 · #128692 · protein
Selenomethionine labelled anbu (gly-1) mutant from hyphomicrobium sp. strain MC1
5NYF: “Selenomethionine labelled anbu (gly-1) mutant from hyphomicrobium sp. strain MC1”. X-ray diffraction, 2 ligands (NA, PO4), 1 pocket (best druggability 0.32). MolNFT v1 #128692 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5NYF
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Anbu
- UniProt
- F8JB59
- Ligands
- NA, PO4
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Anbu | protein | 207 | 34% helix, 28% strand | F8JB59 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.32 | 0.74 | 15 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 5NYF · Selenomethionine labelled Anbu (Gly-1) mutant from Hyphomicrobium sp. strain MC1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F8JB59
- Elsewhere: RCSB PDB 5NYF · PDBe 5NYF · UniProt F8JB59
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