MolNFT v1 · #128664 · protein
L. reuteri 53608 srrp
5NXK · Serine-rich secreted cell wall anchored (lpxtg-motif )…: “L. reuteri 53608 srrp”. X-ray diffraction, 7 pockets (best druggability 0.74). MolNFT v1 #128664 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NXK
- Type
- protein
- Length
- 921 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serine-rich secreted cell wall anchored (lpxtg-motif ) protein
- UniProt
- A0A0S4NNC0
- Pockets
- 7 · best druggability 0.74
Structure
x-ray diffraction · 3 distinct chains · 3% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine-rich secreted cell wall anchored (lpxtg-motif ) protein | protein | 306 | 3% helix, 53% strand | A0A0S4NNC0 |
| B | Serine-rich secreted cell wall anchored (lpxtg-motif ) protein | protein | 305 | 3% helix, 54% strand | A0A0S4NNC0 |
| C | Serine-rich secreted cell wall anchored (lpxtg-motif ) protein | protein | 310 | 4% helix, 53% strand | A0A0S4NNC0 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1180 | 0.74 | 0.77 | 117 | empty |
| 2 | 215 | 0.56 | 0.79 | 35 | empty |
| 3 | 77 | 0.49 | 0.84 | 29 | empty |
| 4 | 64 | 0.45 | 0.83 | 23 | empty |
| 5 | 87 | 0.41 | 0.78 | 24 | empty |
Interfaces
3 interfaces between chains.
- A–B · 590 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 538 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 507 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5NXK · L. reuteri 53608 SRRP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S4NNC0
- Elsewhere: RCSB PDB 5NXK · PDBe 5NXK · UniProt A0A0S4NNC0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.