MolNFT v1 · #128661 · protein

Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein GP34, residues 744-1289 at 2.9 ångström resolution

5NXH · Long-tail fiber proximal subunit: “Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein…”. X-ray diffraction, 10 pockets (best druggability 0.83). MolNFT v1 #128661 on GenesisL1…

PDB: 5NXH
Type: protein
Length: 1,638 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Long-tail fiber proximal subunit
UniProt: P18771
Pockets: 10 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Long-tail fiber proximal subunit	protein	546	10% helix, 41% strand	P18771

Ligands and binding sites

GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	164	0.83	0.98	28	empty
2	59	0.76	0.99	15	empty
3	179	0.49	0.77	31	empty
4	107	0.46	0.79	24	empty
5	121	0.43	0.77	23	empty

Interfaces

3 interfaces between chains.

B–C · 12303 Å² buried · 219 hydrogen bonds · protein-protein
A–B · 12295 Å² buried · 223 hydrogen bonds · protein-protein
A–C · 12280 Å² buried · 222 hydrogen bonds · protein-protein

Compared structures

5NXH · Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P18771
Elsewhere: RCSB PDB 5NXH · PDBe 5NXH · UniProt P18771

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