MolNFT v1 · #128649 · protein
Crystal structure of LINALOOL/NEROLIDOL synthase from streptomyces clavuligerus in complex with 2-fluorogeranyl diphosphate
5NX5: “Crystal structure of LINALOOL/NEROLIDOL synthase from streptomyces clavuligerus in complex with…”. X-ray diffraction, 4 ligands (0FV, MG, CL). MolNFT v1 #128649 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NX5
- Type
- protein
- Length
- 579 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- D5SL78
- Ligands
- 0FV, MG, CL, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 287 | — | D5SL78 |
| B | — | protein | 292 | — | D5SL78 |
Ligands and binding sites
- 0FV · (2Z)-2-fluoro-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · chains B
- GOL · Glycerol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NX5 · Crystal structure of Linalool/Nerolidol synthase from Streptomyces clavuligerus in… · the same entry in another collection · chain A against A, TM-score 1.00
- D5SL78 · AlphaFold monomer V2.0 prediction for R-linalool synthase (D5SL78) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5SL78
- Elsewhere: RCSB PDB 5NX5 · PDBe 5NX5 · UniProt D5SL78
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