MolNFT v1 · #128635 · protein
Crystal structure of the lectin domain from the F17-like adhesin, ucld
5NWP: “Crystal structure of the lectin domain from the F17-like adhesin, ucld”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.50). MolNFT v1 #128635 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NWP
- Type
- protein
- Length
- 394 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adhesin
- UniProt
- Q8GA71
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Adhesin | protein | 197 | 8% helix, 53% strand | Q8GA71 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.50 | 0.80 | 30 | SO4 |
| 2 | 110 | 0.50 | 0.81 | 23 | empty |
| 3 | 76 | 0.37 | 0.77 | 17 | empty |
| 4 | 76 | 0.34 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 673 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5NWP · Crystal Structure of the Lectin Domain From the F17-like Adhesin, UclD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8GA71
- Elsewhere: RCSB PDB 5NWP · PDBe 5NWP · UniProt Q8GA71
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