MolNFT v1 · #128590 · protein
Crystal structure of hexameric cbs-CP12 protein from bloom-forming cyanobacteria at 2.5 a resolution in P6322 crystal form
5NVD: “Crystal structure of hexameric cbs-CP12 protein from bloom-forming cyanobacteria at 2.5 a resolution in P6322…”. X-ray diffraction, 3 pockets (best druggability 0.41). MolNFT v1 #128590 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5NVD
- Type
- protein
- Length
- 174 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cbs-CP12
- UniProt
- A8YJ50
- Pockets
- 3 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cbs-CP12 | protein | 174 | 49% helix, 17% strand | A8YJ50 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.41 | 0.77 | 17 | empty |
| 2 | 87 | 0.39 | 0.77 | 15 | empty |
| 3 | 57 | 0.30 | 0.75 | 13 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5NVD · Crystal structure of hexameric CBS-CP12 protein from bloom-forming cyanobacteria at 2.5 A… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8YJ50
- Elsewhere: RCSB PDB 5NVD · PDBe 5NVD · UniProt A8YJ50
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