MolNFT v1 · #128576 · protein
Junin virus GP1 glycoprotein in complex with an antibody Fab fragment
5NUZ: “Junin virus GP1 glycoprotein in complex with an antibody Fab fragment”. X-ray diffraction, 3 ligands (MAN, NAG, BMA). MolNFT v1 #128576 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NUZ
- Type
- protein
- Length
- 1,151 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C1K9J9
- Ligands
- MAN, NAG, BMA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, H | — | protein | 215 | — | — |
| B | — | protein | 218 | — | — |
| C, D | — | protein | 142 | — | C1K9J9 |
| L | — | protein | 219 | — | — |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 9 copies · chains C, H, A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains C, D, H
- BMA · beta-D-mannopyranose · sugar · 2 copies · chains H
- GOL · Glycerol · additive · 11 copies · chains A, B, H, C, L, D
- IPA · Isopropyl alcohol · additive · 6 copies · chains A, H, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NUZ · Junin virus GP1 glycoprotein in complex with an antibody Fab fragment · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1K9J9
- Elsewhere: RCSB PDB 5NUZ · PDBe 5NUZ · UniProt C1K9J9
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