MolNFT v1 · #128527 · DNA

The effect of berenil and cacodylateon the crystal structure of D(CGTGAATTCACG)

5NT5 · DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3'): “The effect of berenil and cacodylateon the crystal structure of D(CGTGAATTCACG)”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #128527 on GenesisL1: 3D structure, binding sites and…

PDB: 5NT5
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
Ligands: NA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(CPGPTPGPAPAPTPTPCPAPCPG)-3')	dna	12	—	—

Ligands and binding sites

NA · Sodium ion · metal · chains A
CAC · Cacodylate ion · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 570 Å² buried · 49 hydrogen bonds · nucleic-nucleic

Compared structures

5NT5 · The effect of Berenil and Cacodylateon the crystal structure of d(CGTGAATTCACG) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5NT5 · PDBe 5NT5

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