MolNFT v1 · #128489 · protein
Human DNMT3B pwwp domain in complex with N,N-BIS(2-hydroxypropyl) ethanolamine
5NRS: “Human DNMT3B pwwp domain in complex with N,N-BIS(2-hydroxypropyl) ethanolamine”. X-ray diffraction, 2 ligands (962, SO4). MolNFT v1 #128489 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NRS
- Type
- protein
- Length
- 266 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UBC3
- Ligands
- 962, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 133 | — | Q9UBC3 |
Ligands and binding sites
- 962 · (2~{S})-1-[2-hydroxyethyl-[(2~{S})-2-oxidanylpropyl]amino]propan-2-ol · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NRS · Human DNMT3B PWWP domain in complex with N,N-bis(2-hydroxypropyl)ethanolamine · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBC3 · AlphaFold monomer V2.0 prediction for DNA (cytosine-5)-methyltransferase 3B (Q9UBC3) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBC3
- Elsewhere: RCSB PDB 5NRS · PDBe 5NRS · UniProt Q9UBC3
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