MolNFT v1 · #128434 · protein
'porcine (sus scrofa) major histocompatibility complex, class I, with human BETA2 micro globulin, presenting efedltfla
5NQ3: “'porcine (sus scrofa) major histocompatibility complex, class I, with human BETA2 micro globulin, presenting…”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #128434 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NQ3
- Type
- protein
- Length
- 770 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B1PJV3, P61769
- Ligands
- SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 276 | — | B1PJV3 |
| B, E | — | protein | 100 | — | P61769 |
| C, F | — | protein | 9 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B, D, E
- GOL · Glycerol · additive · 2 copies · chains D, E
- EDO · 1,2-ethanediol · additive · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NQ3 · 'Porcine (Sus scrofa) Major Histocompatibility Complex, class I, with human beta2 micro… · the same entry in another collection · chain F against F, TM-score 1.00
- P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1PJV3
- Every structure of UniProt P61769
- Elsewhere: RCSB PDB 5NQ3 · PDBe 5NQ3 · UniProt B1PJV3 · UniProt P61769
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