MolNFT v1 · #128429 · protein

Crystal structure of helicobacter pylori flagellar hook protein FLGE2

5NPY · Flagellar basal body protein: “Crystal structure of helicobacter pylori flagellar hook protein FLGE2”. X-ray diffraction, 2 pockets (best druggability 0.75). MolNFT v1 #128429 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5NPY
Type: protein
Length: 472 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flagellar basal body protein
UniProt: B5Z7R4
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flagellar basal body protein	protein	472	8% helix, 46% strand	B5Z7R4

Ligands and binding sites

144 · Tris-hydroxymethyl-methyl-ammonium · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.75	0.99	17	empty
2	113	0.47	0.79	26	empty

Compared structures

5NPY · Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B5Z7R4
Elsewhere: RCSB PDB 5NPY · PDBe 5NPY · UniProt B5Z7R4

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