MolNFT v1 · #128405 · protein
Crystal structure of bacillus subtilis ydib in complex with ADP
5NP9: “Crystal structure of bacillus subtilis ydib in complex with ADP”. X-ray diffraction, 2 ligands (ADP, MG). MolNFT v1 #128405 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NP9
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O05515
- Ligands
- ADP, MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 152 | — | O05515 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NP9 · Crystal structure of Bacillus subtilis YdiB in complex with ADP · the same entry in another collection · chain A against A, TM-score 1.00
- O05515 · AlphaFold monomer V2.0 prediction for tRNA threonylcarbamoyladenosine biosynthesis… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O05515
- Elsewhere: RCSB PDB 5NP9 · PDBe 5NP9 · UniProt O05515
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