MolNFT v1 · #128383 · RNA
The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine
5NOM · RNA (5'- R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*…: “The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine”. X-ray diffraction, 3 ligands (GAI, NA, SO4). MolNFT v1 #128383 on GenesisL1: 3D…
- PDB
- 5NOM
- Type
- RNA
- Length
- 18 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'- R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3')
- Ligands
- GAI, NA, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (5'- R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | rna | 18 | — | — |
Ligands and binding sites
- GAI · Guanidine · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 5NOM · The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5NOM · PDBe 5NOM
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