MolNFT v1 · #128359 · protein
Crystal structure of the phosphatase domain from the legionella effector wipb
5NNY: “Crystal structure of the phosphatase domain from the legionella effector wipb”. X-ray diffraction, 2 pockets (best druggability 0.81). MolNFT v1 #128359 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NNY
- Type
- protein
- Length
- 628 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Wipb
- UniProt
- Q5GA15
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Wipb | protein | 308 | 50% helix, 12% strand | Q5GA15 |
| B | Wipb | protein | 320 | 48% helix, 11% strand | Q5GA15 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1171 | 0.81 | 0.82 | 110 | empty |
| 2 | 95 | 0.33 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 1828 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 5NNY · Crystal structure of the phosphatase domain from the Legionella effector WipB · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5GA15
- Elsewhere: RCSB PDB 5NNY · PDBe 5NNY · UniProt Q5GA15
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