MolNFT v1 · #128252 · protein
X-ray crystal structure of an AA9 lpmo
5NKW · Auxiliary activity 9: “X-ray crystal structure of an AA9 lpmo”. X-ray diffraction, 5 ligands (BMA, BGC, NAG). MolNFT v1 #128252 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NKW
- Type
- protein
- Length
- 235 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Auxiliary activity 9
- UniProt
- A0A0S2GKZ1
- Ligands
- BMA, BGC, NAG, CU, CL
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Auxiliary activity 9 | protein | 235 | 7% helix, 30% strand | A0A0S2GKZ1 |
Ligands and binding sites
- BMA · beta-D-mannopyranose · sugar · 6 copies · chains A
- BGC · beta-D-glucopyranose · sugar · 6 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- CU · Copper (II) ion · metal · chains A
- CL · Chloride ion · ion · 17 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide, 1 glycan, 1 modified (disulfide, N-glycosylation, methylation).
Compared structures
- 5NKW · X-ray crystal structure of an AA9 LPMO · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0S2GKZ1
- Elsewhere: RCSB PDB 5NKW · PDBe 5NKW · UniProt A0A0S2GKZ1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.