MolNFT v1 · #128211 · protein

Mix-and-diffuse serial synchrotron crystallography: structure of N,N', N''-triacetylchitotriose bound to lysozyme with 1S time-delay, phased with 1HEW

5NJP · Lysozyme C: “Mix-and-diffuse serial synchrotron crystallography: structure of N,N', N''-triacetylchitotriose bound to…”. X-ray diffraction, 3 ligands (NAG, NA, CL), 1 pocket (best druggability 0.37). MolNFT v1 #128211 on GenesisL1…

PDB: 5NJP
Type: protein
Length: 129 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme C
EC: 3.2.1.17
UniProt: P00698
Ligands: NAG, NA, CL
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme C (EC 3.2.1.17)	protein	129	41% helix, 11% strand	P00698

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.37	0.76	18	NAG

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5NJP · Mix-and-diffuse serial synchrotron crystallography: structure of… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00698
Elsewhere: RCSB PDB 5NJP · PDBe 5NJP · UniProt P00698

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