MolNFT v1 · #128181 · protein
Structure of human programmed cell death 1 ligand 1 (pd-L1) with low molecular mass inhibitor
5NIU: “Structure of human programmed cell death 1 ligand 1 (pd-L1) with low molecular mass inhibitor”. X-ray diffraction, 1 ligand (8YZ). MolNFT v1 #128181 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NIU
- Type
- protein
- Length
- 504 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NZQ7
- Ligands
- 8YZ
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 126 | — | Q9NZQ7 |
| B | — | protein | 125 | — | Q9NZQ7 |
| D | — | protein | 127 | — | Q9NZQ7 |
Ligands and binding sites
- 8YZ · (2~{R})-2-[[2-[(3-cyanophenyl)methoxy]-4-[[3-(2,3-dihydro-1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-methyl-phenyl]methylamino]-3-oxidanyl-propanoic acid · ligand · 2 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NIU · Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NZQ7
- Elsewhere: RCSB PDB 5NIU · PDBe 5NIU · UniProt Q9NZQ7
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