MolNFT v1 · #128073 · protein
Human JMJD7 in complex with mn and 2OG in the P21212 form
5NFO: “Human JMJD7 in complex with mn and 2OG in the P21212 form”. X-ray diffraction, 3 ligands (AKG, MN, NO3). MolNFT v1 #128073 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NFO
- Type
- protein
- Length
- 635 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0C870
- Ligands
- AKG, MN, NO3
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 317 | — | P0C870 |
| B | — | protein | 318 | — | P0C870 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · 2 copies · chains A, B
- NO3 · Nitrate ion · ion · 2 copies · chains A, B
- GOL · Glycerol · additive · 6 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NFO · Human JMJD7 in complex with Mn and 2OG in the P21212 form · the same entry in another collection · chain A against A, TM-score 1.00
- P0C870 · AlphaFold monomer V2.0 prediction for bifunctional peptidase and (3S)-lysyl hydroxylase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C870
- Elsewhere: RCSB PDB 5NFO · PDBe 5NFO · UniProt P0C870
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