MolNFT v1 · #127947 · protein
Bacteroides ovatus mixed linkage glucan pul (mlgul) GH16
5NBO · Glycosyl hydrolase family 16: “Bacteroides ovatus mixed linkage glucan pul (mlgul) GH16”. X-ray diffraction, 2 pockets (best druggability 0.79). MolNFT v1 #127947 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NBO
- Type
- protein
- Length
- 474 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyl hydrolase family 16
- UniProt
- A7LY25
- Pockets
- 2 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Glycosyl hydrolase family 16 | protein | 237 | 7% helix, 48% strand | A7LY25 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 998 | 0.79 | 0.81 | 100 | EDO |
| 2 | 255 | 0.54 | 0.76 | 44 | EDO |
Interfaces
1 interface between chains.
- A–B · 693 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5NBO · Bacteroides ovatus mixed linkage glucan PUL (MLGUL) GH16 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7LY25
- Elsewhere: RCSB PDB 5NBO · PDBe 5NBO · UniProt A7LY25
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