MolNFT v1 · #127939 · protein
Structure of the cytoplasmic domain I of outf in the D. dadantii type II secretion system
5NBG · General secretion pathway protein F: “Structure of the cytoplasmic domain I of outf in the D. dadantii type II secretion system”. X-ray diffraction, 1 pocket (best druggability 0.60). MolNFT v1 #127939 on GenesisL1: 3D structure…
- PDB
- 5NBG
- Type
- protein
- Length
- 214 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- General secretion pathway protein F
- UniProt
- E0SM39
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | General secretion pathway protein F | protein | 107 | 78% helix, 0% strand | E0SM39 |
| B | General secretion pathway protein F | protein | 107 | 79% helix, 0% strand | E0SM39 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 290 | 0.60 | 0.79 | 44 | empty |
Interfaces
1 interface between chains.
- A–B · 742 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5NBG · Structure of the cytoplasmic domain I of OutF in the D. dadantii type II secretion system · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E0SM39
- Elsewhere: RCSB PDB 5NBG · PDBe 5NBG · UniProt E0SM39
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