MolNFT v1 · #127937 · DNA
[RU(TAP)2(DPPZ-11-CN)]2+ bound to D(TCGGCGCCGA)2
5NBE · DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'): “[RU(TAP)2(DPPZ-11-CN)]2+ bound to D(TCGGCGCCGA)2”. X-ray diffraction, 2 ligands (QHL, BA). MolNFT v1 #127937 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5NBE
- Type
- DNA
- Length
- 10 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3')
- Ligands
- QHL, BA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3') | dna | 10 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5NBE · [Ru(TAP)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5NBE · PDBe 5NBE
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