MolNFT v1 · #127922 · protein
Crystal structures of homooligomers of collagen type IV. ALPHA5NC1
5NAZ · Collagen alpha-5(IV) chain: “Crystal structures of homooligomers of collagen type IV. ALPHA5NC1”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.31). MolNFT v1 #127922 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5NAZ
- Type
- protein
- Length
- 226 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen alpha-5(IV) chain
- UniProt
- P29400
- Ligands
- CL
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Collagen alpha-5(IV) chain | protein | 226 | 10% helix, 42% strand | P29400 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.31 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 5NAZ · Crystal structures of homooligomers of collagen type IV. alpha5NC1 · the same entry in another collection · chain A against A, TM-score 1.00
- P29400 · AlphaFold monomer V2.0 prediction for collagen alpha-5(IV) chain (P29400) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29400
- Elsewhere: RCSB PDB 5NAZ · PDBe 5NAZ · UniProt P29400
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