MolNFT v1 · #127887 · protein
The full-length structure of zntb
5N9Y · Zinc transport protein zntb: “The full-length structure of zntb”. Electron microscopy, 20 pockets (best druggability 0.89). MolNFT v1 #127887 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5N9Y
- Type
- protein
- Length
- 1,635 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Zinc transport protein zntb
- UniProt
- P64423
- Pockets
- 20 · best druggability 0.89
Structure
electron microscopy · 1 distinct chain · 48% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | Zinc transport protein zntb | protein | 327 | 48% helix, 12% strand | P64423 |
Pockets
20 pockets found on a 1 Å grid, 16 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1162 | 0.89 | 0.90 | 127 | empty |
| 2 | 446 | 0.71 | 0.81 | 52 | empty |
| 3 | 738 | 0.71 | 0.78 | 60 | empty |
| 4 | 411 | 0.68 | 0.80 | 52 | empty |
| 5 | 428 | 0.68 | 0.80 | 57 | empty |
Interfaces
9 interfaces between chains.
- A–E · 2386 Ų buried · 24 hydrogen bonds · protein-protein
- D–E · 2346 Ų buried · 22 hydrogen bonds · protein-protein
- B–C · 2337 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 2316 Ų buried · 17 hydrogen bonds · protein-protein
- A–B · 2314 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P64423
- Elsewhere: RCSB PDB 5N9Y · PDBe 5N9Y · UniProt P64423
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