MolNFT v1 · #127834 · protein
Serial cu nitrite reductase structures at elevated cryogenic temperature, 240K. dataset 2.
5N8G · Copper-containing nitrite reductase: “Serial cu nitrite reductase structures at elevated cryogenic temperature, 240K. dataset 2.”. X-ray diffraction, 2 ligands (CU, SO4), 2 pockets (best druggability 0.77). MolNFT v1 #127834 on…
- PDB
- 5N8G
- Type
- protein
- Length
- 333 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copper-containing nitrite reductase
- EC
- 1.7.2.1
- UniProt
- P25006
- Ligands
- CU, SO4
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Copper-containing nitrite reductase (EC 1.7.2.1) | protein | 333 | 11% helix, 40% strand | P25006 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.77 | 0.97 | 19 | empty |
| 2 | 53 | 0.39 | 0.81 | 20 | empty |
Compared structures
- 5N8G · Serial Cu nitrite reductase structures at elevated cryogenic temperature, 240K. Dataset 2. · the same entry in another collection · chain A against A, TM-score 1.00
- P25006 · AlphaFold monomer V2.0 prediction for copper-containing nitrite reductase (P25006) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25006
- Elsewhere: RCSB PDB 5N8G · PDBe 5N8G · UniProt P25006
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