MolNFT v1 · #127581 · protein
Crystal structure of opha-DELTAC6 mutant R72A in complex with sah
5N0U · Peptide N-methyltransferase: “Crystal structure of opha-DELTAC6 mutant R72A in complex with sah”. X-ray diffraction, 2 ligands (SAH, MG), 3 pockets (best druggability 0.73). MolNFT v1 #127581 on GenesisL1: 3D structure, binding…
- PDB
- 5N0U
- Type
- protein
- Length
- 391 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptide N-methyltransferase
- Ligands
- SAH, MG
- Pockets
- 3 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptide N-methyltransferase | protein | 391 | 38% helix, 14% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 589 | 0.73 | 0.80 | 45 | SAH |
| 2 | 239 | 0.49 | 0.74 | 30 | empty |
| 3 | 65 | 0.44 | 0.82 | 16 | empty |
Compared structures
- 5N0U · Crystal structure of OphA-DeltaC6 mutant R72A in complex with SAH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5N0U · PDBe 5N0U
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