MolNFT v1 · #127567 · protein
Crystal structure of cobh T85A (precorrin-8X methyl mutase) complexed with C5 allyl-hba
5N0G · Precorrin-8X methylmutase: “Crystal structure of cobh T85A (precorrin-8X methyl mutase) complexed with C5 allyl-hba”. X-ray diffraction, 1 ligand (8F5). MolNFT v1 #127567 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5N0G
- Type
- protein
- Length
- 208 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Precorrin-8X methylmutase
- EC
- 5.4.1.2
- UniProt
- D5AV08
- Ligands
- 8F5
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Precorrin-8X methylmutase (EC 5.4.1.2) | protein | 208 | 51% helix, 10% strand | D5AV08 |
Ligands and binding sites
- 8F5 · 3-[(1~{R},2~{S},3~{S},4~{Z},7~{S},8~{S},9~{Z},15~{R}, 17~{R},18~{R},19~{R})-2,7,18-tris(2-hydroxy-2-oxoethyl)-3,13,17-tris(3-hydroxy-3-oxopropyl)-1,2,7, 12,12,15,17-heptamethyl-5-prop-2-enyl-3,8,15,18,19,21-hexahydrocorrin-8-yl]propanoic acid · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5N0G · Crystal Structure of CobH T85A (precorrin-8x methyl mutase) complexed with C5 allyl-HBA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5AV08
- Elsewhere: RCSB PDB 5N0G · PDBe 5N0G · UniProt D5AV08
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