MolNFT v1 · #127492 · protein
Tungstate binding protein - tupa - from desulfovibrio alaskensis G20
5MY5 · ABC transporter periplasmic substrate-binding protein: “Tungstate binding protein - tupa - from desulfovibrio alaskensis G20”. X-ray diffraction, 2 ligands (NA, CL), 1 pocket (best druggability 0.53). MolNFT v1 #127492 on GenesisL1…
- PDB
- 5MY5
- Type
- protein
- Length
- 250 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ABC transporter periplasmic substrate-binding protein
- UniProt
- Q316W1
- Ligands
- NA, CL
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ABC transporter periplasmic substrate-binding protein | protein | 250 | 41% helix, 25% strand | Q316W1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 235 | 0.53 | 0.77 | 34 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5MY5 · Tungstate binding protein - TupA - from Desulfovibrio alaskensis G20 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q316W1
- Elsewhere: RCSB PDB 5MY5 · PDBe 5MY5 · UniProt Q316W1
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