MolNFT v1 · #127485 · protein
KUSTC0563 C-type cytochrome
5MXY · Cytochrome C-552 KS_3358: “KUSTC0563 C-type cytochrome”. X-ray diffraction, 2 ligands (HEC, ZN), 1 pocket (best druggability 0.66). MolNFT v1 #127485 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MXY
- Type
- protein
- Length
- 83 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C-552 KS_3358
- UniProt
- Q30JB5
- Ligands
- HEC, ZN
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C-552 KS_3358 | protein | 83 | 55% helix, 2% strand | Q30JB5 |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
- ZN · Zinc ion · metal · 10 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.66 | 0.83 | 28 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 5MXY · KustC0563 c-type cytochrome · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q30JB5
- Elsewhere: RCSB PDB 5MXY · PDBe 5MXY · UniProt Q30JB5
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