MolNFT v1 · #127459 · protein
Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate hppnp-2
5MX6: “Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate hppnp-2”. X-ray diffraction, 3 ligands (HPA, SO4, PO4). MolNFT v1 #127459 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MX6
- Type
- protein
- Length
- 1,398 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- K2JXG0
- Ligands
- HPA, SO4, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | — | protein | 233 | — | K2JXG0 |
Ligands and binding sites
- HPA · Hypoxanthine · ligand · 6 copies · chains A, B, C, D, E, F
- SO4 · Sulfate ion · ion · 9 copies · chains A, D, B, E, C, F
- PO4 · Phosphate ion · ion · chains C, F
- PEG · Di(hydroxyethyl)ether · additive · 5 copies · chains A, B, C, D, E, F
- ACT · Acetate ion · additive · 2 copies · chains A, D, C, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MX6 · Crystal structure of H. pylori purine nucleoside phosphorylase from clinical isolate… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K2JXG0
- Elsewhere: RCSB PDB 5MX6 · PDBe 5MX6 · UniProt K2JXG0
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