MolNFT v1 · #127410 · protein

Crystal structure of bacillus subtilus ydib

5MVR · TRNA threonylcarbamoyladenosine biosynthesis protein tsae: “Crystal structure of bacillus subtilus ydib”. X-ray diffraction, 2 ligands (ADP, MG). MolNFT v1 #127410 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MVR
Type: protein
Length: 148 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA threonylcarbamoyladenosine biosynthesis protein tsae
UniProt: O05515
Ligands: ADP, MG

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA threonylcarbamoyladenosine biosynthesis protein tsae	protein	148	32% helix, 30% strand	O05515

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5MVR · Crystal structure of Bacillus subtilus YdiB · the same entry in another collection · chain A against A, TM-score 1.00
O05515 · AlphaFold monomer V2.0 prediction for tRNA threonylcarbamoyladenosine biosynthesis… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O05515
Elsewhere: RCSB PDB 5MVR · PDBe 5MVR · UniProt O05515

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