MolNFT v1 · #127356 · protein

Human TNF-alpha in complex with JNJ525

5MU8: “Human TNF-alpha in complex with JNJ525”. X-ray diffraction, 1 ligand (JNI). MolNFT v1 #127356 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MU8
Type: protein
Length: 6,955 residues
Chains: 48
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01375
Ligands: JNI

Structure

x-ray diffraction · 24 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	141	—	P01375
B	—	protein	145	—	P01375
C, T	—	protein	146	—	P01375
D, G, K, M, Q, S, U, Y, a, e, q, s	—	protein	149	—	P01375
F	—	protein	140	—	P01375
H, X, j	—	protein	150	—	P01375
I	—	protein	141	—	P01375
J, V, d	—	protein	138	—	P01375
L	—	protein	142	—	P01375
N, Z, l, t	—	protein	143	—	P01375
O, c	—	protein	145	—	P01375
P	—	protein	145	—	P01375
R	—	protein	138	—	P01375
W	—	protein	143	—	P01375
b	—	protein	144	—	P01375
f	—	protein	143	—	P01375
g, i, u, w	—	protein	145	—	P01375
h	—	protein	137	—	P01375
k	—	protein	142	—	P01375
m	—	protein	147	—	P01375
n	—	protein	147	—	P01375
o	—	protein	147	—	P01375
p	—	protein	139	—	P01375
r, v	—	protein	144	—	P01375

Ligands and binding sites

JNI · ~{N}4-(phenylmethyl)-~{N}4-[2-[3-(2-piperazin-1-ylpyrimidin-5-yl)phenyl]phenyl]pyrimidine-2,4-diamine · ligand · 46 copies · chains A, B, D, C, F, G, I, H, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, c, b, d, e, f, h, i, k, j, l, m, n, o, p, q, s, r, t, u, w, v

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5MU8 · Human TNF-alpha in complex with JNJ525 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01375
Elsewhere: RCSB PDB 5MU8 · PDBe 5MU8 · UniProt P01375

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