MolNFT v1 · #127353 · protein

Structure of maf glycosyltransferase from magnetospirillum magneticum amb-1

5MU5 · Uncharacterized protein: “Structure of maf glycosyltransferase from magnetospirillum magneticum amb-1”. X-ray diffraction, 2 ligands (CL, SO4), 8 pockets (best druggability 0.51). MolNFT v1 #127353 on GenesisL1: 3D structure…

PDB: 5MU5
Type: protein
Length: 632 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q2W9I6
Ligands: CL, SO4
Pockets: 8 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	632	52% helix, 14% strand	Q2W9I6

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A
SO4 · Sulfate ion · ion · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A
PGE · Triethylene glycol · additive · chains A
PG4 · Tetraethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	195	0.51	0.77	35	empty
2	139	0.46	0.77	29	SO4
3	109	0.44	0.78	16	empty
4	53	0.43	0.83	20	empty
5	85	0.35	0.75	17	empty

Compared structures

5MU5 · Structure of MAf glycosyltransferase from Magnetospirillum magneticum AMB-1 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2W9I6
Elsewhere: RCSB PDB 5MU5 · PDBe 5MU5 · UniProt Q2W9I6

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