MolNFT v1 · #127287 · protein
Crystal structure of the legionella pneumophila effector protein RAVZ_1-487
5MS8: “Crystal structure of the legionella pneumophila effector protein RAVZ_1-487”. X-ray diffraction, 1 ligand (BA), 5 pockets (best druggability 0.52). MolNFT v1 #127287 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MS8
- Type
- protein
- Length
- 377 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Legionella pneumophila effector protein ravz
- UniProt
- Q5ZUV9
- Ligands
- BA
- Pockets
- 5 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Legionella pneumophila effector protein ravz | protein | 377 | 41% helix, 18% strand | Q5ZUV9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.52 | 0.76 | 24 | empty |
| 2 | 132 | 0.50 | 0.80 | 22 | empty |
| 3 | 154 | 0.43 | 0.75 | 23 | empty |
| 4 | 105 | 0.37 | 0.75 | 27 | empty |
| 5 | 55 | 0.24 | 0.72 | 9 | empty |
Compared structures
- 5MS8 · Crystal structure of the legionella pneumophila effector protein RavZ_1-487 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZUV9
- Elsewhere: RCSB PDB 5MS8 · PDBe 5MS8 · UniProt Q5ZUV9
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