MolNFT v1 · #127225 · protein
Crystal structure of RAE1 (yacp) from bacillus subtilis (W164L mutant)
5MQ9 · Uncharacterized protein yacp: “Crystal structure of RAE1 (yacp) from bacillus subtilis (W164L mutant)”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.74). MolNFT v1 #127225 on GenesisL1: 3D structure, binding…
- PDB
- 5MQ9
- Type
- protein
- Length
- 318 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein yacp
- UniProt
- P37574
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 58% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein yacp | protein | 159 | 59% helix, 14% strand | P37574 |
| B | Uncharacterized protein yacp | protein | 159 | 57% helix, 14% strand | P37574 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 678 | 0.74 | 0.80 | 76 | SO4 |
Interfaces
1 interface between chains.
- A–B · 1132 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 5MQ9 · Crystal structure of Rae1 (YacP) from Bacillus subtilis (W164L mutant) · the same entry in another collection · chain A against A, TM-score 1.00
- P37574 · AlphaFold monomer V2.0 prediction for uncharacterized protein yacp (P37574) · a predicted model of the same protein · chain A against A, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37574
- Elsewhere: RCSB PDB 5MQ9 · PDBe 5MQ9 · UniProt P37574
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